Huang Lab

Publications

Journal Papers

2026

  1. Huang CH, Oyang YJ, Huang HC, Juan HF. scDock: Streamlining drug discovery targeting cell-cell communication via scRNA-seq analysis and molecular docking. Bioinformatics, 42, btag103 (2026).
  2. Yang CC, Lin CY, Yuan HY, Huang HC, Juan HF. Mass spectrometry-based human spatial omics: fundamentals, innovations, and applications. J. Biomed. Sci., 33, 16 (2026). (IF: 12.1)
  3. Lee SC, Yu KH, Huang HC, Juan HF. Reactive oxygen species driven immune inflammation in systemic sclerosis: mechanisms and emerging therapeutics. Drug Discovery Today, 31, 104620 (2026).

2025

  1. Tseng TY, Hsieh CH, Huang HC, Wu YC, Hsu C, Hsu CL, Ou DL, Juan HF. Transcriptional dynamics of CD8+ T-cell exhaustion in immune checkpoint inhibitor resistance at single-cell resolution. Mol. Cancer, 24, 306 (2025). (IF: 33.9)
  2. Yu PC, Kao YC, Chang HY, Huang CH, Hsu WM, Huang HC, Juan HF. Quantitative proteomics unveils the synergistic effects of combination drugs on cytoskeleton composition and autophagy-mediated cell death in neuroblastoma. J. Proteome. Res., 24, 3578−3596 (2025).
  3. Shih JC, Chen PY, Kuo CH, Hsieh CH, Chang HY, Lee HC, Huang CH, Hsu CH, Hsu WM, Huang HC, Juan HF. DHODH blockade induces ferroptosis in neuroblastoma by modulating the mevalonate pathway. Mol. Cell. Proteomics, 24, 101014 (2025).
  4. Tseng TY, Hsieh CH, Liu JY, Huang HC, Juan HF. Single-cell and multi-omics integration reveals cholesterol biosynthesis as a synergistic target with HER2 in aggressive breast cancer. Comput. Struct. Biotechnol. J., 27, 1719-1731 (2025).
  5. Hsieh CH, Chen YX, Tseng TY, Li A, Huang HC, Juan HF. Transcriptionally distinct malignant neuroblastoma populations show selective response to adavosertib treatment. Neurotherapeutics, 22, e00575 (2025).
  6. Su YY, Huang HC, Lin YT, Chuang YF, Sheu SY, Lin CC. HEDDI-Net: heterogeneous network embedding for drug-disease association prediction and drug repurposing, with application to Alzheimer's disease. J. Transl. Med., 23, 57 (2025). (IF: 7.5)

2024

  1. Sun YY, Hsieh CY, Wen JH, Tseng TY, Huang JH, Oyang YJ, Huang HC, Juan HF. scDrug+: predicting drug-responses using single-cell transcriptomics and molecular structure. Biomed. Pharmacother. 177, 117070 (2024). (IF: 7.5)
  2. Lee SC, Huang CH, Oyang YJ, Huang HC, Juan HF. Macrophages as determinants and regulators of systemic sclerosis-related interstitial lung disease. J. Transl. Med. 22, 600 (2024). (IF: 7.5)
  3. Wang WH, Kao YC, Hsieh CH, Tsai SY, Cheung CHY, Huang HC, Juan HF. Multiomics reveals induction of neuroblastoma SK-N-BE(2)C cell death by mitochondrial division inhibitor 1 through multiple effects. J. Proteome Res., 23, 301-315 (2024).

2023

  1. Hsieh CH, Huang CT, Cheng YS, Hsu CH, Hsu WM, Chung YH, Liu YL, Yang TS, Chien CY, Lee YH, Huang HC, Juan HF. Homoharringtonine as a PHGDH inhibitor: Unraveling metabolic dependencies and developing a potent therapeutic strategy for high-risk neuroblastoma. Biomed. Pharmacother. 166, 115429 (2023). (IF: 7.5)
  2. Ho WL, Huang HC, Huang JR. IFF: Identifying key residues in intrinsically disordered regions of proteins using machine learning. Protein Sci. 32, e4739 (2023).
  3. Su YY, Liu YL, Huang HC, Lin CC. Ensemble learning model for identifying the hallmark genes of NFκB/TNF signaling pathway in cancers. J. Transl. Med. 21, 485 (2023).
  4. Kao YC, Chang YW, Lai CP, Chang NW, Huang CH, Chen CS, Huang HC, Juan HF. Ectopic ATP synthase stimulates the secretion of extracellular vesicles in cancer cells. Commun. Biol. 6, 642 (2023).
  5. Chang YW, Tony Yang T, Chen MC, Liaw YG, Yin CF, Lin-Yan XQ, Huang TY, Hou JT, Hung YH, Hsu CL, Huang HC, Juan HF. Spatial and temporal dynamics of ATP synthase from mitochondria toward the cell surface. Commun. Biol. 6, 427 (2023).
  6. Tu YH, Juan HF, Huang HC. Context-dependent gene regulatory network reveals regulation dynamics and cell trajectories using unspliced transcripts. Brief. Bioinform., 24, bbac633 (2023). (IF: 7.7)
  7. Juan HF, Huang HC. Quantitative analysis of high‐throughput biological data. WIREs Comput. Mol. Sci., 13, e1658 (2023).
  8. Chen CC, Huang YW, Huang HC, Lo WC, Lyu PC. SeqCP: A sequence-based algorithm for searching circularly permuted proteins. Comput. Struct. Biotechnol. J., 21, 185-201 (2023).
  9. Hsieh CY, Wen JH, Lin SM, Tseng TY, Huang JH, Huang HC, Juan HF. scDrug: From single-cell RNA-seq to drug response prediction. Comput. Struct. Biotechnol. J., 21, 150-157 (2023).
  10. Chen KP, Hsu CL, Oyang YJ, Huang HC, Juan HF. BIC: a database for the transcriptional landscape of bacteria in cancer. Nucleic Acids Res., 51, D1205-D1211 (2023).

2022

  1. Zhou TA, Hsu HP, Tu YH, Cheng HK, Lin CY, Chen NJ, Tsai JW, Robey EA, Huang HC, Hsu CL, Dzhagalov IL. Thymic macrophages consist of two populations with distinct localization and origin. eLife, 11, e75148 (2022).
  2. Hsu CL, Yin CF, Chang YW, Fan YC, Lin SH, Wu YC, Huang HC, Juan HF. LncRNA SNHG1 regulates neuroblastoma cell fate via interactions with HDAC1/2. Cell Death Dis., 13, 809 (2022). (IF: 9.6)
  3. Li A, Chen JY, Hsu CL, Oyang YJ, Huang HC, Juan HF. A single-cell network-based drug repositioning strategy for post-COVID-19 pulmonary fibrosis. Pharmaceutics, 14, 971 (2022).
  4. Chang YW, Wang CC, Yin CF, Wu CH, Huang HC, Juan HF. Quantitative phosphoproteomics reveals ectopic ATP synthase on mesenchymal stem cells to promote tumor progression via ERK/c-Fos pathway activation. Mol. Cell. Proteomics., 21, 100237 (2022).
  5. Yu WH, Hsu CL, Lin CC, Oyang YJ, Juan HF, Huang HC. Stratification of lncRNA modulation networks in breast cancer. BMC Medical Genomics, 14(Suppl 3), 300 (2022).
  6. Yin CF, Chang YW, Huang HC, Juan HF. Targeting protein interaction networks in mitochondria dynamics for cancer therapy. Drug Discovery Today, 27, 1077-1087 (2022). (IF: 7.5)
  7. Ko KY, Chen CY, Juan HF, Huang HC. Phylotranscriptomic patterns of network stochasticity and pathway dynamics during embryogenesis. Bioinformatics, 38, 763–769 (2022). (IF: 7.1)
  8. Chang CS, Yu WH, Su CC, Ruan JW, Lin CM, Huang CT, Tsai YT, Lin IJ, Lai CY, Chuang TH, Lin WJ, Tan TH, Huang HC, Juan HF, Kao CY. Single-cell RNA sequencing uncovers the individual alteration of intestinal mucosal immunocytes in Dusp6 knockout mice. iScience, 25, 103738 (2022).
  9. Yu PC, Huang CH, Kuo CJ, Liang PH, Wang LH, Pan MY, Chang SY, Chao TL, Ieong SM, Fang JT, Huang HC, Juan HF. Drug Repurposing for the Identification of Compounds with Anti-SARS-CoV-2 Capability via Multiple Targets. Pharmaceutics, 14, 176 (2022).
  10. Hsieh CH, Yeh HN, Huang CT, Wang WH, Hsu WM, Huang HC, Juan HF. BI-2536 Promotes Neuroblastoma Cell Death via Minichromosome Maintenance Complex Components 2 and 10. Pharmaceuticals, 15, 37 (2022).

2021

  1. Li A, Yu WH, Hsu CL, Huang HC, Juan HF. Modular signature of long non-coding RNA association networks as a prognostic biomarker in lung cancer. BMC Medical Genomics, 14(Suppl 3), 290 (2021).
  2. Chang CS, Liao YC, Huang CT, Lin CM, Cheung CHY, Ruan JW, Yu WH, Tsai YT, Lin IJ, Huang CH, Liou JS, Chou YH, Chien HJ, Chuang HL, Juan HF, Huang HC, Chan HL, Liao YC, Tang SC, Su YW, Tan TH, Bäumler AJ, Kao CY. Identification of a gut microbiota member that ameliorates DSS-induced colitis in intestinal barrier enhanced Dusp6-deficient mice. Cell Rep., 37, 110016 (2021).
  3. Tu YH, Juan HF, Huang HC. Identification of cell states using super-enhancer RNA. BMC Genomics, 22(Suppl 3), 787 (2021).
  4. Li A, Huang HT, Huang HC, Juan HF. LncTx: A network-based method to repurpose drugs acting on the survival-related lncRNAs in lung cancer. Comput. Struct. Biotechnol. J., 19, 3990–4002 (2021).
  5. Wang WH, Chen SK, Huang HC, Juan HF. Proteomic analysis reveals metformin suppresses PSMD2, STIP1 and CAP1 for anti-gastric cancer AGS cell proliferation and migration. ACS Omega, 6, 14208-14219 (2021).
  6. Chen TF, Chang YC, Hsiao Y, Lee KH, Hsiao YC, Lin YH, Tu YE, Huang HC, Chen CY, Juan HF. DockCoV2: a drug database against SARS-CoV-2. Nucleic Acids Res., 49, D1152-D1159 (2021).

2020

  1. Huang CT, Chao TL, Kao HC, Pang YH, Lee WH, Hsieh CH, Chang SY, Huang HC, Juan HF. Enhancement of the IFN-β-induced host signature informs repurposed drugs for COVID-19. Heliyon, 6, e05646 (2020).
  2. Chang YW, Hsu CL, Tang CW, Chen XJ, Huang HC, Juan HF. Multiomics reveals ectopic ATP synthase blockade induces cancer cell death via a lncRNA-mediated phospho-signaling network. Mol. Cell. Proteomics., 19, 1805-1825 (2020).
  3. Cheung CHY, Hsu CL, Lin TY, Chen WT, Wang YC, Huang HC, Juan HF. ZNF322A-mediated protein phosphorylation induces autophagosome formation through modulation of IRS1-AKT glucose uptake and HSP-elicited UPR in lung cancer. J. Biomed. Sci., 27, 75 (2020). (IF: 12.1)
  4. Wang WH, Hsu CL, Huang HC, Juan HF. Quantitative phosphoproteomics reveals cell alignment and mitochondrial length change under cyclic stretching in lung cells. Int. J. Mol. Sci., 21, 4074 (2020).
  5. Yin CF, Kao SC, Hsu CL, Chang YW, Cheung CHY, Huang HC, Juan HF. Phosphoproteome analysis reveals dynamic heat shock protein 27 phosphorylation in tanshinone IIA-induced cell death. J. Proteome Res., 19, 1620-1634 (2020).
  6. Ho TC, Wang EY, Yeh KH, Jeng YM, Horng JH, Wu LL, Chen YT, Huang HC, Hsu CL, Chen PJ, Yeh SH, Chen DS. Complement C1q mediates the expansion of periportal hepatic progenitor cells in senescence-associated inflammatory liver. Proc. Natl. Acad. Sci. USA, 117, 6717-6725 (2020).
  7. Lee WH, Chen KP, Wang K, Huang HC, Juan HF. Characterizing the cancer-associated microbiome with small RNA sequencing data. Biochem. Biophys. Res. Commun., 522, 776-782 (2020).

2019

  1. Chang HC†, Huang HC†, Juan HF, Hsu CL. Investigating the role of super-enhancer RNAs underlying embryonic stem cell differentiation. BMC Genomics, 20(Suppl 10), 896 (2019).
  2. Cheung CHY, Hsu CL, Tsuei CY, Kuo TT, Huang CT, Hsu WM, Chung YH, Wu HY, Hsu CC, Huang HC, Juan HF. Combinatorial targeting of MTHFD2 and PAICS in purine synthesis as a novel therapeutic strategy. Cell Death Dis., 10, 786 (2019). (IF: 9.6)
  3. Hsieh CH, Cheung CHY, Liu YL, Hou CL, Hsu CL, Huang CT, Yang TS, Chen SF, Chen CN, Hsu WM, Huang HC, Juan HF. Quantitative proteomics of Th-MYCN transgenic mice reveals Aurora kinase inhibitor altered metabolic pathways and enhanced ACADM to suppress neuroblastoma progression. J. Proteome Res., 18, 3850-3866 (2019).
  4. Huang CT, Hsieh CH, Chung YH, Oyang YJ, Huang HC, Juan HF. Perturbational gene-expression signatures for combinatorial drug discovery. iScience, 15, 291-306 (2019).
  5. Huang CT, Hsieh CH, Lee WC, Liu YL, Yang TS, Hsu WM, Oyang YJ, Huang HC, Juan HF. Therapeutic targeting of non-oncogene dependencies in high-risk neuroblastoma. Clin. Cancer Res., 25, 4063-4078 (2019). (IF: 10.2)
  6. Sathipati SY, Sahu D, Huang HC, Lin Y, Ho SY. Identification and characterization of the lncRNA signature associated with overall survival in patients with neuroblastoma. Sci. Rep., 9, 5125 (2019).
  7. Yang TW, Sahu D, Chang YW, Hsu CL, Hsieh CH, Huang HC, Juan HF. RNA-binding proteomics reveals MATR3 interacting with lncRNA SNHG1 to enhance neuroblastoma progression. J. Proteome Res.,18, 406-416 (2019).
  8. Chen YR, Huang HC, Lin CC. Regulatory feedback loops bridge the human gene regulatory network and regulate carcinogenesis. Brief. Bioinform., 20, 976–984 (2019).

2018

  1. Huang CT, Hsieh CH, Oyang YJ, Huang HC, Juan HF. A large-scale gene expression intensity-based similarity metric for drug repositioning. iScience, 7, 40-52 (2018).
  2. Chang JY, Yu WH, Juan HF, Huang HC. Dynamics of alternative polyadenylation in human preimplantation embryos. Biochem. Biophys. Res. Commun., 504, 727-733 (2018).
  3. Sahu D, Ho SY, Juan HF, Huang HC. High-risk, expression-based prognostic long noncoding RNA signature in neuroblastoma. JNCI Cancer Spectrum, 2, pky015 (2018).

2017

  1. Cheung CHY, Hsu CL, Chen KP, Chong ST, Wu CH, Huang HC, Juan HF. MCM2-regulated functional networks in lung cancer by multi-dimensional proteomic approach. Sci. Rep., 7, 13302 (2017).
  2. Hsu CL, Wang JK, Lu PC, Huang HC, Juan HF. DynaPho: a web platform for inferring the dynamics of time-series phosphoproteomics. Bioinformatics, 33, 3664-3666 (2017).
  3. Li SW, Watanabe K, Hsu CC, Chao SH, Yang ZH, Lin YJ, Chen CC, Cao YM, Huang HC, Chang CH, Tsai YC. Bacterial composition and diversity in breast milk samples from mothers living in Taiwan and Mainland China. Front. Microbiol., 8, 965 (2017).

2016

  1. Wu CH, Hsu CL, Lu PC, Lin WC, Juan HF, Huang HC. Identification of lncRNA functions in lung cancer based on associated protein-protein interaction modules. Sci. Rep., 6, 35939 (2016).
  2. Sahu D, Hsu CL, Lin CC, Yang TW, Hsu WM, Ho SY, Juan HF, Huang HC. Co-expression analysis identifies long noncoding RNA SNHG1 as a novel predictor for event-free survival in neuroblastoma. Oncotarget, 7, 58022-58037 (2016).
  3. Hsu CL, Chang HY, Chang JY, Hsu WM, Huang HC, Juan HF. Unveiling MYCN regulatory networks in neuroblastoma via integrative analysis of heterogeneous genomics data. Oncotarget, 7, 36293-36310 (2016).
  4. Kao CC, Yi G, Huang HC. The core of hepatitis C virus pathogenesis. Curr. Opin. Virol., 17, 66-73 (2016).
  5. Jen J, Lin LL, Chen HT, Liao SY, Lo FY, Tang YA, Su WC, Salgia R, Hsu CL, Huang HC, Juan HF, Wang YC. Oncoprotein ZNF322A transcriptionally deregulates alpha-adducin, cyclin D1 and p53 to promote tumor growth and metastasis in lung cancer. Oncogene, 35, 2357-69 (2016).

2015

  1. Hu CW, Hsu CL, Wang YC, Ishihama Y, Ku WC, Huang HC, Juan HF. Temporal phosphoproteome dynamics induced by an ATP synthase inhibitor citreoviridin. Mol. Cell. Proteomics, 14, 3284-98 (2015).
  2. Hsu CL, Juan HF, Huang HC. Functional analysis and characterization of differential coexpression networks. Sci. Rep., 5, 13295 (2015).
  3. Lin LL, Hsu CL, Hu CW, Ko SY, Hsieh HL, Huang HC, Juan HF. Integrating phosphoproteomics and bioinformatics to study brassinosteroid-regulated phosphorylation dynamics in Arabidopsis. BMC Genomics, 16, 533 (2015).
  4. Lin LL, Huang HC, Juan HF. Circadian systems biology in metazoa. Briefings in Bioinformatics, 16, 1008-24 (2015).
  5. Lin LL, Hsia CR, Hsu CL, Huang HC, Juan HF. Integrating transcriptomics and proteomics to show that tanshinone IIA suppresses cell growth by blocking glucose metabolism in gastric cancer cells. BMC Genomics, 16, 41 (2015).
  6. Chang HY, Li MH, Huang TC, Hsu CL, Tsai SR, Lee SC, Huang HC, Juan HF. Quantitative proteomics reveals middle infrared radiation-interfered networks in breast cancer cells. J. Proteome Res., 14, 1250-62 (2015).

2014

  1. Chang HY, Huang TC, Chen NN, Huang HC, Juan HF. Combination therapy targeting ectopic ATP synthase and 26S proteasome induces ER stress in breast cancer cells. Cell Death Dis., 5, e1540 (2014).
  2. Chen CY, Ho A, Huang HY, Juan HF, Huang HC. Dissecting the human protein-protein interaction network via phylogenetic decomposition. Sci. Rep., 4, 7153 (2014).
  3. Huang CT, Oyang YJ, Huang HC, Juan HF. MicroRNA-mediated networks underlie immune response regulation in papillary thyroid carcinoma. Sci. Rep., 4, 6495 (2014).
  4. Yang KC, Hsu CL, Lin CC, Juan HF, Huang HC. Mirin: Identifying microRNA regulatory modules in protein-protein interaction network. Bioinformatics, 30, 2527-8 (2014).
  5. Lin LL, Huang HC, Juan HF. Deciphering molecular determinants of chemotherapy in gastrointestinal malignancy using systems biology approaches. Drug Discovery Today, 19, 1402-1409 (2014).
  6. Wu PY, Liao YF, Juan HF, Huang HC, Wang BJ, Lu YL, Yu IS, Shih YY, Jeng YM, Hsu WM, Lee H. Aryl hydrocarbon receptor downregulates MYCN expression and promotes cell differentiation of neuroblastoma. PLoS ONE, 9, e88795 (2014).
  7. A.J.~Bevan, etal. The Physics of the B Factories. Eur. Phys. J. C 74, 3026 (2014).

2013

  1. Wu YH, Hu CW, Chien CW, Chen YJ, Huang HC, Juan HF. Quantitative proteomic analysis of human lung tumor xenografts treated with the ectopic ATP synthase inhibitor citreoviridin. PLoS ONE, 8, e70642 (2013).
  2. Hu CW, Tseng CW, Chien CW, Huang HC, Ku WC, Lee SJ, Chen YJ, Juan HF. Quantitative Proteomics Reveals Diverse Roles of miR-148a from Gastric Cancer Progression to Neurological Development. J. Proteome Res., 12, 3993-4004 (2013).
  3. Lin LL, Wu CC, Huang HC, Chen HJ, Hsieh HL, Juan HF. Identification of microRNA 395a in 24-epibrassinolide-regulated root growth of Arabidopsis thaliana using microRNA arrays. Int. J. Mol. Sci., 14, 14270-86 (2013).
  4. Lin CC, Lee CH, Fuh CS, Juan HF, Huang HC. Link clustering reveals structural characteristics and biological contexts in signed molecular networks. PLoS ONE, 8, e67089 (2013).
  5. Huang RL, Gu F, Kirma NB, Ruan J, Chen CL, Wang HC, Liao YP, Chang CC, Yu MH, Pilrose JM, Thompson IM, Huang HC, Huang THM, Lai HC, Nephew KP. Comprehensive methylome analysis of ovarian tumors reveals hedgehog signaling pathway regulators as prognostic DNA methylation biomarkers. Epigenetics, 8, 624-34 (2013).
  6. Lee CH, Kuo WH, Lin CC, Oyang YJ, Huang HC, Juan HF. MicroRNA-regulated protein-protein interaction networks and their functions in breast cancer. Int. J. Mol. Sci., 14, 11560-606 (2013).
  7. Liu WY, Chang YM, Chen SC, Lu CH, Wu YH, Lu MY, Chen DR, Shih AC, Sheue CR, Huang HC, Yu CP, Lin HH, Shiu SH, Ku MSB, Li WH. Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination. Proc. Natl. Acad. Sci. USA, 110, 3979-84 (2013).
  8. Liao HH, CC Lin, Juan HF, Huang HC. Differential microRNA regulation correlates with alternative polyadenylation pattern between breast cancer and normal cells. PLoS ONE, 8, e56958 (2013).
  9. Chang HY, Shih MH, Huang HC, Tsai SR, Juan HF, Lee SC. Middle infrared radiation induces G$_2$/M cell cycle arrest in A549 lung cancer cells. PLoS ONE, 8, e54117 (2013).
  10. Fu SC, Huang HC, Horton P, Juan HF. ValidNESs: a database of validated leucine-rich nuclear export signals. Nucleic Acids Res., 41, D338-D343 (2013).

2012

  1. Chen CY, Chen ST, Juan HF, Huang HC. Lengthening of 3$^prime$UTR increases with morphological complexity in animal evolution. Bioinformatics, 28, 3178-81 (2012).
  2. Hu CW, Lin MH, Huang HC, Ku WC, Yi TH, Tsai CF, Chen YJ, Sugiyama N, Ishihama Y, Juan HF, Wu SH. Phosphoproteomic analysis of Rhodopseudomonas palustris reveals the role of pyruvate phosphate dikinase phosphorylation in lipid production. J. Proteome Res., 11, 5362-75 (2012).
  3. Lin LL, Huang HC, Juan HF. Revealing the molecular mechanism of gastric cancer marker annexin A4 in cancer cell proliferation using exon arrays. PLoS ONE, 7, e44615 (2012).
  4. Lin LL, Huang HC, Ogihara S, Wang JT, Wu MC, McNeil PL, Chen CN, Juan HF. Helicobacter pylori disrupts host cell membranes, initiating a repair response and cell proliferation. Int. J. Mol. Sci., 13, 10176-92 (2012).
  5. Lu KY, Tao SC, Yang TC, Ho YH, Lee CH, Lin CC, Juan HF, Huang HC, Yang CY, Chen MS, Lin YY, Lu JY, Zhu H, Chen CS. Profiling lipid-protein interactions using non-quenched fluorescent liposomal nanovesicles and proteome microarrays. Mol. Cell. Proteomics, 11, 1177-90 (2012).
  6. Chang HY, Huang HC, Huang TC, Yang PC, Wang YC, Juan HF. Ectopic ATP synthase blockade suppresses lung adenocarcinoma growth by activating the unfolded protein response. Cancer Res. 72, 4696-4706 (2012).
  7. Huang RL, Chang CC, Su PH, Chen YC, Liao YP, Wang HC, Yo YT, Chao TK, Huang HC, Lin CY, Chu TY, Lai HC. Methylomic Analysis Identifies Frequent DNA Methylation of Zinc Finger Protein 582 (ZNF582) in Cervical Neoplasms. PLoS ONE, 7, e41060 (2012).
  8. Tseng CW, Huang HC, Shih AC, Chang YY, Hsu CC, Chang JY, Juan HF, Li WH. Revealing the anti-tumor effect of artificial miRNA p-27-5p on human breast carcinoma cell line T-47D. Int. J. Mol. Sci., 13, 6352-69 (2012).
  9. Lin LL, Huang HC, Juan HF. Discovery of biomarkers for gastric cancer: a proteomics approach. J. Proteomics, 75, 3081-97 (2012).
  10. Lin CC, Chen YJ, Chen CY, Oyang YJ, Juan HF, Huang HC. Crosstalk between transcription factors and microRNAs in human protein interaction network. BMC Syst. Biol., 6, 18 (2012).
  11. Chen PJ, Yeh SH, Liu WH, Lin CC, Huang HC, Chen CL, Chen DS, Chen PJ. The androgen pathway stimulates microRNA-216a transcription to suppress the TSLC1 tumor suppressor gene in early hepatocarcinogenesis. Hepatology, 56, 632-43 (2012).

2011

  1. Hu CW, Chang YL, Chen SJ, Kuo-Huang LL, Liao JC, Huang HC, Juan HF. Revealing the Functions of the Transketolase Enzyme Isoforms in Rhodopseudomonas palustris Using a Systems Biology Approach. PLoS ONE, 6, e28329 (2011).
  2. Huang TC, Chang HY, Chen CY, Wu PY, Lee H, Liao YF, Hsu WM, Huang HC, Juan HF. Silencing of miR-124 induces neuroblastoma SK-N-SH cell differentiation, cell cycle arrest and apoptosis through promoting AHR. FEBS Lett., 585, 3582-6 (2011).
  3. Tsai SR, Huang TC, Liang CM, Chang HY, Chang YT, Huang HC, Juan HF, Lee SC. The effect of narrow bandwidth infrared radiation on the growth of Escherichia coli. Appl. Phys. Lett., 99, 163704 (2011).
  4. Lee CH, Huang HC, Juan HF. Reviewing ligand-based rational drug design: the search for an ATP synthase inhibitor. Int. J. Mol. Sci., 12, 5304-5318 (2011).
  5. Tseng CW, Lin CC, Chen CN, Huang HC, Juan HF. Integrative network analysis reveals active microRNAs and their functions in gastric cancer. BMC Syst. Biol., 5, 99 (2011).
  6. Tseng CW, Yang JC, Chen CN, Huang HC, Chuang KN, Lin CC, Lai HS, Lee PH, Chang KJ, Juan HF. Identification of 14-3-3$beta$ in human gastric cancer cells and its potency as a diagnostic and prognostic biomarker. Proteomics, 11, 2423-39 (2011).
  7. Chen CY, Chen ST, Fuh CS, Juan HF, Huang HC. Coregulation of transcription factors and microRNAs in human transcriptional regulatory network. BMC Bioinformatics, 12 (Suppl 1), S41 (2011).
  8. Hsu JW, Huang HC, Lee TY, Chen ST, Wong CH, Juan HF. Ganoderma lucidum polysaccharides induce macrophage-like differentiation in human leukemia THP-1 cells via caspase and p53 activation. Evid.-based Complement Altern. Med., 2011, 358711 (2011).

2010

  1. Lin CC, Hsiang JT, Wu CY, Oyang YJ, Juan HF, Huang HC. Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy. BMC Syst. Biol., 4, 138 (2010).
  2. Wu TH, Chang IYF, Chu LCJ, Huang HC, Ng WV. Modularity of Escherichia coli sRNA regulation revealed by sRNA-targets and protein network analysis. BMC Bioinformatics, 11 (Suppl 7), S11 (2010).

2009

  1. Hwang YC, Lin CC, Chang JY, Mori H, Juan HF, Huang HC. Predicting essential genes based on network and sequence analysis. Mol. BioSyst., 5, 1672--1678 (2009).
  2. Lin CC, Juan HF, Hsiang JT, Hwang YC, Mori H, Huang HC. Essential core of protein-protein interaction network in Escherichia coli. J. Proteome Res., 8, 1925--1931 (2009).

2008

  1. Hsu CW, Juan HF, Huang HC. Characterization of microRNA-regulated protein-protein interaction network. Proteomics, 8, 1975--1979 (2008).
  2. Fang YC, Huang HC, Chen HH, Juan HF. TCMGeneDIT: a database for associated traditional Chinese medicine, gene and disease information using text mining. BMC Complement Altern Med, 8, 58 (2008).
  3. Chen, H.-W.$^†$, Huang, H.-C.$^†$, Lin, Y.-S., Chang, K.-J., Kuo, W.-H., Hwa, H.-L., Hsieh, F.-J., Juan, H.-F.. Comparison and Identification of Estrogen-Receptor Related Gene Expression Profiles in Breast Cancer of Different Ethnic Origins. Breast Cancer: Basic and Clinical Research, 1, 35-49 (2008).
  4. Fang YC, Huang HC, Juan HF. MeInfoText: associated gene methylation and cancer information from text mining. BMC Bioinformatics, 9, 22 (2008).

2007

  1. Cheng KC$^†$, Huang HC$^†$, Chen JH, Hsu JW, Cheng HC, Ou CH, Yang WB, Chen ST, Wong CH, Juan HF. Ganoderma lucidum polysaccharides in human monocytic leukemia cells: from gene expression to network construction. BMC Genomics, 8, 411 (2007).
  2. Huang TC, Huang HC, Chang CC, Chang HY, Ou CH, Hsu CH, Chen ST, Juan HF. An apoptosis-related gene network induced by novel compound -- cRGD in human breast cancer cells. FEBS Lett., 581, 3517-22 (2007).
  3. Leu JH†, Chang CC†, Wu JL, Hsu CW, Hirono I, Aoki T, Juan HF, Lo CF, Kou GH, Huang HC. Comparative analysis of differentially expressed genes in normal and white spot syndrome virus infected Penaeus monodon. BMC Genomics, 8, 120 (2007).

2006

  1. Tseng, H.-W. , Juan, H.-F., Huang, H.-C., Chen, C.-F., Chen, S.-T., Wang, G.-J.. Lipopolysaccharide-stimulated responses in rat aortic endothelial cells by a systems biology approach. Proteomics, 6, 5915-5928 (2006).
  2. Chen YR, Juan HF, Huang HC, Huang HH, Lee YJ, Lio MY, Tseng CW, Lin LL, Chen JY, Wang MJ, Chen JH, Chen YJ. Quantitative proteomic and genomic profiling reveals metastasis-related protein expression patterns in gastric cancer cells. J. Proteome Res. 5, 2727-2742 (2006).
  3. M. Arifuzzaman1, M. Maeda, A. Itoh, K. Nishikata, C. Takita, R. Saito, T. Ara, K. Nakahigashi, H.-C. Huang, A. Hirai, K. Tsuzuki, S. Nakamura, M. Altaf-Ul-Amin, T. Oshima, T. Baba, N. Yamamoto, T. Kawamura, T. Ioka-Nakamichi, M. Kitagawa, M. Tomita, S. Kanaya, C. Wada, H. Mori. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16, 686-91 (2006).
  4. Juan, H.-F., Wang, I-H., Huang, T.-C., Li, J.-J., Chen, S.-T., Huang, H.-C.. Proteomics analysis of a novel compound: cyclic RGD in breast carcinoma cell line MCF-7. Proteomics, 11, 2991-3000 (2006).
  5. Lee, T.-Y., Horng, J.-T., Juan, H.-F., Huang, H.-D., Wu, L.-C., Lin, F.-M., Huang, H.-C.. An agent-based system to discover protein-protein interactions, identify protein complexes and proteins with multiple peptide mass fingerprints. J. Comput. Chem, 27, 1020-32 (2006).

2005

  1. Juan, H.-F., Chang, S.-C., Huang, H.-C., Chen, S.-T.. A new application of microwave technology to proteomics. Proteomics 5, 840-842 (2005).
  2. Belle Collaboration, P.~Chang et al.. Measurements of branching fractions and CP asymmetries in $B to eta h$ decays. Phys. Rev. D 71, 091106 (2005).

2004

  1. C.C. Wu, H.C. Huang, H.F. Juan, S.T. Chen. GeneNetwork: an interactive interface for reconstructing genetic network based on microarray data. Bioinformatics 20, 3691-3693 (2004).
  2. C.Y.~Wu, J.T.~Jan, S.H.~Ma, C.J.~Kuo, H.F.~Juan, Y.S.E.~Cheng, H.H.~Hsu, H.C.~Huang, D.~Wu, A.~Brik, F.S.~Liang, R.S.~Liu, J.M.~Fang, S.T.~Chen, P.H. Liang, C.H.~Wong. Small molecules targeting severe acute respiratory syndrome human coronavirus. Proc. Natl. Acad. Sci. USA 101, 10012-10017 (2004).
  3. Chang DT, Chen CY, Chung WC, Oyang YJ, Juan HF, Huang HC. ProteMiner-SSM: a web server for efficient analysis of similar protein tertiary substructures. Nucleic Acids Res. 32, W76-82 (2004).
  4. Belle Collaboration, M.-Z. Wang, etal. Observation of $B^+ to p overlinep pi^+$, $B to p overlinep K$, and $B^+ to p overlinep K+$. PRL 92, 131801 (2004).
  5. Belle Collaboration, Y.~Chao, etal. Evidence for direct $CP$ violation in $B to K^+ pi^-$ decays. PRL 93, 191802 (2004).
  6. Belle Collaboration, C.~Schwanda, etal. Evidence for $B^+ to omega ell^+ nu$. PRL 93, 131803 (2004).
  7. Belle Collaboration, Y. Enari, etal. Search for the Lepton-Flavor-Violating Decay $tau^- to mu^- eta$ at Belle. PRL 93, 081803 (2004).
  8. Belle Collaboration, R.~Chistov etal. Observation of $B^+ to psi(3770) K^+$. PRL 93, 051803 (2004).
  9. belle. Observation of Large CP Violation and Evidence for Direct CP Violation in $B to pi^+ pi^Ð$ Decays. PRL 93, 021601 (2004).
  10. Belle Collaboration, K.~Abe etal. Study of $B^- to D*0pi^- (D*0 to D^(*)+pi^-)$ decays. PRD 69, 112002 (2004).
  11. Belle Collaboration, Y.~Chao etal. Improved measurements of the branching fractions for $B to Kpi$, $pipi$, and $K overlineK$ decays. PRD 69, 111102(R) (2004).
  12. belle. Upper Bound on the Decay $tau to mu gamma$ from the Belle Detector. PRL 92, 171802 (2004).
  13. Belle Collaboration, O. Tajima, etal. Observation of Radiative Decay $D to phi gamma$. PRL 92, 101803 (2004).
  14. Belle Collaboration, H. Kakuno, etal. Measurement of $|V_ub|$ using inclusive $B to X_u ell nu$ decays with a novel $X_u$-reconstruction method. PRL 92, 101801 (2004).
  15. Belle Collaboration, A. Drutskoy, etal. Observation of radiative $B to phi K gamma$ decays. PRL 92, 051801 (2004).
  16. Belle Collaboration, Y. Mikami, etal. Measurements of the $D_sJ$ resonance properties. PRL b 92, 012002 (2004).
  17. Belle Collaboration, S.L. Zang, etal. Search for $B^- to J/psi Lambda overlinep$ decay. PRD 69, 017101 (2004).
  18. belle. Measurement of $K^+ K^-$ production in two-photon collisions in the resonant-mass region. Eur. Phys. J. C 32, 323 (2004).
  19. Belle Collaboration, A. Garmash, etal. Study of B meson decays to three-body charmless hadronic final states. PRD 69, 012001 (2004).

2003

  1. Belle Collaboration, H.-C. Huang etal. Evidence for $B to phi phi K$. PRL 91, 241802 (2003).
  2. KEK-E246 Collaboration, V.V.~Anisimovsky etal. First measurement of the $T$-violating muon polarization in the decay $K^+ to mu^+ nu gamma$. PLB562, 166 (2003).
  3. Belle Collaboration, A. Ishikawa, etal. Observation of $B to K ell^+ ell^-$. PRL 91, 261601 (2003).
  4. Belle Collaboration, S.-K. Choi, etal. Observation of a narrow charmonium-like state in exclusive $B^+ to K^+ pi^+ pi^- J/psi$ decays. PRL 91, 262001 (2003).
  5. Belle Collaboration, S.H. Lee, etal. Evidence for $B to pi pi$. PRL 91 261801 (2003).
  6. Belle Collaboration, M.-C. Chang, etal. Search for $B to ell^+ ell^-$ at Belle. PRD 68, 111101(R) (2003).
  7. belle. Measurement of Time-Dependent $CP$-Violating Asymmetries in $B to phi K_S$, $K^+ K^- K_S$, and $eta^prime K_S$ Decays. PRL 91, 261602 (2003).
  8. Belle Collaboration, P. Krokovny, etal. Observation of the $D_sJ(2317)$ and $D_sJ(2457)$ in $B$ decays. PRL 91, 262002 (2003).
  9. Belle Collaboration, J. Zhang, etal. Observation of $B^+ to rho^+ rho$. PRL 91, 221801 (2003).
  10. Belle Collaboration, K.-F. Chen, etal. Measurement of Branching Fractions and Polarization in $B to phi K^(*)$ Decays. PRL 91, 201801 (2003).
  11. Belle Collaboration, Y. Unno, K. Suzuki, etal. Improved Measurement of the Partial-Rate $CP$ Asymmetry in $B^+ to Kpi^+$ and $B^- to overlineK pi^-$ Decays. PRD 68, 011103 (2003).
  12. Belle Collaboration, S.K. Swain, T.E. Browder, etal. Measurement of Branching Fraction Ratios and $CP$ Asymmetries in $B^pm to D_CPK^pm$. PRD 68, 051101 (2003).
  13. Belle Collaboration, M.-Z. Wang, etal. Observation of $B to p overlineLambda pi^-$. PRL 90, 201802 (2003).
  14. belle. Evidence for $CP$-Violating Asymmetries in $B to pi^+pi^-$ Decays and Constraints on the CKM Angle $phi_2$. PRD 68, 012001 (2003).
  15. Belle Collaboration, P. Krokovny etal. Observation of $overlineB to D overlineK$ and $overlineB to D overlineK0$ Decays. PRL 90, 141802 (2003).
  16. belle. Study of Time-Dependent $CP$-Violating Asymmetries in $b to s q overlineq$ Decays. PRD 67, 031102(R) (2003).
  17. Belle Collaboration, N. C. Hastings etal. Studies of $B$-$overlineB$ Mixing Properties with Inclusive Dilepton Events. PRD 67, 052004 (2003).
  18. Belle Collaboration, N. Gabyshev etal. Observation of $overlineB to Lambda_c overlinep$ Decay. PRL 90, 121802 (2003).
  19. Belle Collaboration, Y. Zheng etal. Measurement of the $B$-$overlineB$ Mixing Rate with $B(overlineB) to Dmp pi^pm$ Partial Reconstruction. PRD 67, 092004 (2003).
  20. belle. Measurement of Branching Fractions and Charge Asymmetries for Two-Body $B$ Meson Decays with Charmonium. PRD 67, 032003 (2003).
  21. Belle Collaboration, A. Satpathy etal. Study of $overlineB to D^(*)0 pi^+ pi^-$ Decays. PLB553, 159 (2003).
  22. Belle Collaboration, K. Inami etal. Search for the Electric Dipole Moment of the $tau$ Lepton. PLB55, 16 (2003).
  23. Belle Collaboration, F. Fang etal. Measurement of Branching Fractions for $Bto eta_c K^(*)$ Decays. PRL 90, 071801 (2003).
  24. Belle Collaboration, J. Kaneko etal. Measurement of the Electroweak Penguin Process $B to X_s ell^+ ell^-$. PRL 90, 021801 (2003).
  25. Belle Collaboration, K. Abe etal. Studies of the Decay $B^pm to D_CP K^pm$. PRL 90, 131803 (2003).

2002

  1. Belle Collaboration, R.-S. Lu etal. Observation of $B^pm to omega K^pm$ Decay. PRL 89, 191801 (2002).
  2. Belle Collaboration, A.~Abashian etal. The Belle detector. NIMA479, 117 (2002).
  3. belle. Observation of $B^pmto p overlinep K^pm$. PRL 88, 181803 (2002).
  4. belle. Observation of the Color-Suppressed Decay $overlineB to D pi$. PRL 88, 052002 (2002).
  5. Belle Collaboration, N. Gabyshev etal. Study of Exclusive $B$ decays to Charmed Baryons at Belle. Phys. Rev. D 66, 091102(R) (2002).
  6. belle. Measurement of the Inclusive Semileptonic Branching Fraction of $B$ Mesons and $|V_cb|$. PLB547, 181 (2002).
  7. belle. Improved Measurement of Mixing-induced $CP$ Violation in the Neutral $B$ Meson System. Phys. Rev. D 66, 071102(R) (2002).
  8. Belle Collaboration, B.C.K. Casey etal. Charmless Hadronic Two-Body $B$ Meson Decays. Phys. Rev. D 66, 092002 (2002).
  9. Belle Collaboration, P. Krokovny etal. Observation of $D_s^+ K^-$ and Evidence for $D_s^+ pi^-$ Final States in Neutral $B$ Decays. PRL 89, 231804 (2002).
  10. Belle Collaboration, K. Hara etal. Mesurement of the $B - overlineB$ Mixing Parameter $Delta m_d$ using Semileptonic $B$ Decays. PRL 89, 251803 (2002).
  11. Belle Collaboration, A. Drutskoy etal. Observation of $B to D^(*) K^- K(*)$ Decays. PLB542, 171 (2002).
  12. Belle Collaboration, K.-F. Chen etal. Measurement of $CP$-Violating Parameters in $B to eta^prime K$ Decays. PLB546, 196 (2002).
  13. belle. Measurement of the Oscillation Frequency for $B-overlineB$ Mixing using Hadronic $B$ Decays. PLB542, 207 (2002).
  14. Belle Collaboration, A. Gordon etal. Study of $B to rho pi$ Decays at Belle. PLB542, 183 (2002).
  15. belle. Observation of the Decay $B to D^+ D-$. PRL 89, 122001 (2002).
  16. Belle Collaboration, S.-K. Choi etal. Observation of the $eta_c(2S)$ in Exclusive $B to K K_S K^- pi^+$ Decays. PRL 89, 102001 (2002).
  17. belle. Observation of Double $c overlinec$ Production at $e^+e^-$ Annihilation at $sqrts approx 10.6$ GeV. PRL 89, 142001 (2002).
  18. belle. Measurement of $chi_c2$ Production in Two-Photon Collisions. PLB540, 33 (2002).
  19. belle. Observation of $overlineB to D^(*)0 p overlinep$. PRL 89, 151802 (2002).
  20. belle. Radiative $B$ Meson Decays into $K pi gamma$ and $K pi pi gamma$ Final States. PRL 89, 231801 (2002).
  21. belle. Measurements of Branching Fractions and Decay Amplitudes in $ B to J/psi K$ Decays. PLB538, 11 (2002).
  22. belle. Study of $CP$-Violating Asymmetries in $B to pi^+ pi^-$ Decays. PRL 89, 071801 (2002).
  23. belle. Search for Charmless Two-body Baryonic Decays of $B$ Mesons. Phys. Rev. D 65, 091103(R) (2002).
  24. belle. Observation of $chi_c2$ Production in $B$-meson Decay. PRL 89, 011803 (2002).
  25. belle. Observation of Mixing-induced $CP$ Violation in the Neutral $B$ Meson System. Phys. Rev. D 66, 032007 (2002).
  26. belle. Precise Measurement of $B$ Meson Lifetimes with Hadronic Final States. PRL 88, 171801 (2002).
  27. Belle Collaboration, A. Garmash etal. Study of Three-body Charmless $B$ Decays. Phys. Rev. D 65, 092005 (2002).
  28. belle. Measurement of $mathcalB( barB to D^+ l^- barnu)$ and Determination of $|V_cb|$. PLB526, 258 (2002).
  29. belle. Determination of $|V_cb|$ using the semileptonic decay $barB to D+e^-barnu$. PLB526, 247 (2002).
  30. belle. Measurement of the Lifetime Difference in $D$ Meson Decays. PRL 88, 162001 (2002).
  31. belle. Observation of $B^+ to chi_c0 K^+$. PRL 88, 031802 (2002).
  32. belle. Production of Prompt Charmonia in $e^+e^-$ Annihilation at $sqrts approx 10.6$ GeV. PRL 88, 052001 (2002).
  33. belle. Observation of the Decay $B to K l^+ l^-$. PRL 88, 021801 (2002).
  34. belle. Observation of Cabibbo-suppressed and $W$-exchange $Lambda_c^+$ baryon decays. PLB524, 33 (2002).
  35. KEK-E246 Collaboration, A.~S.~Levchenko etal. Test of exotic scalar and tensor interactions in $K_e3$ decay using stopped positive kaons. Phys. Atom. Nuclei, 65, 2232-2237 (2002).

2001

  1. belle. Measurement of the branching fraction for $B to eta' K$ and search for $B to eta' pi^+$. PLB517, 309 (2001).
  2. belle. Observation of $B to J/psi K_1(1270)$. PRL 87, 161601 (2001).
  3. belle. Observation of large CP violation in the neutral $B$ meson system. PRL 87, 091802 (2001).
  4. belle. Search for direct CP violation in $B to K pi$ decays. Phys. Rev. D 64, 071101(R) (2001).
  5. KEK-E246 Collaboration, K.~Horie etal. Meaasurement of $Gamma(K_mu3))/Gamma(K_e3)$ ratio using stopped positive kaons. PLB 513, 311 (2001).
  6. belle. Observation of Cabibbo suppressed $B to D^(*) K^-$ decays at Belle. Phys. Rev. Lett. 87, 111801 (2001).
  7. belle. Measurement of branching fractions for $B to pi pi$, $K pi$ and $K K$ decays. Phys. Rev. Lett. 87, 101801 (2001).
  8. belle. A measurement of the branching fraction for the inclusive $B to X_s gamma$ decays with Belle. Phys. Lett. B 511, 151 (2001).
  9. belle. Measurement of inclusive production of neutral pions from $Upsilon(4S)$ decays. Phys. Rev. D 64, 072001 (2001).
  10. Belle Collaboration, A.~Abashian etal. Measurement of the $CP$ violation parameter $sin 2phi_1$ in $B_d$ meson decays. Phys. Rev. Lett. 86, 2509 (2001).
  11. Belle Collaboration, K.~Abe, etal. Measurement of $B_d$-$bar B_d$ mixing rate from the time evolution of dilepton events at the $Upsilon(4S)$. Phys. Rev. Lett. 86, 3228 (2001).
  12. KEK-E246 Collaboration, K.~Horie etal. Measurement of $Gamma(K_mu 3)/Gamma(K_e3)$ ratio using stopped positive kaons. PLB513, 311 (2001).

2000

  1. KEK-E246 Collaboration, S.~Shimizu etal. Test of exotic scalar and tensor couplings in $K^+ to pi e^+ nu$ decay. Phys. Lett. B 495, 33 (2000).
  2. KEK-E246 Collaboration, Y.~H.~Shin etal. A kinematically complete measurement of $K^+ to pi^+ pi pi$ decays. Eur. Phys. J. C12, 627 (2000).
  3. KEK-E246 Collaboration, S.~Shimizu etal. Test of exotic scalar and tensor couplings in $K^+ to pi e^+ nu$ decay. Phys. Lett. B495, 33 (2000).
  4. R.~Akhmetshin, etal. Survey of the properties of BGO crystals for the extreme forward calorimeter at BELLE. NIM A455, 324 (2000).
  5. M.Z.~Wang, H.C.~Huang, etal. Beam test of the BELLE extreme forward calorimeter at KEK. NIM A455, 319 (2000).

1999

  1. KEK-E246 Collaboration, M.~Abe etal. Search for $T$-Violating Transverse Muon Polarization in $K^+ to pi mu^+ nu$ Decay Using Stopped Kaons. Phys. Rev. Lett. 83, 4253 (1999).
  2. K.~C.~Peng et al.. Performance of undoped BGO crystals under extremely high dose conditions. NIM A427, 524 (1999).

1997

  1. S.~K.~Sahu etal. Radiation hardness of undoped BGO crystals. NIM A388, 144 (1997).
  2. H.C.~Huang, K.C.~Peng, S.K.~Sahu, K.~Ueno, Y.H.~Chang, C.H.~Wang, W.S.~Hou. Measurement of radiation damage on an epoxy based optical glue. NIM A385, 559 (1997).
  3. K.~C.~Peng etal. Measurement of radiation damage on an optical reflector. NIM A384, 544 (1997).

1996

  1. T.~Iijima etal. Aerogel Cerenkov counter for the BELLE experiment. NIM A379, 457 (1996).

1995

  1. W.S.~Hou and hch. Singlet charge 2/3 quark hiding the top: Tevatron and LEP implications. Phys. Rev. D 51, 5285 (1995).
  2. Chiou SH, Hung CC, Huang HC, Chen ST, Wang KT, Yang CC. Sequence Comparison and Computer Modeling of Cardiotoxins and Cobratoxin Isolated from Taiwan Cobra. Biochem. Biophys. Res. Commun. 206, 22 (1995).
  3. Chiou SH, Chuang MH, Hung CC, Huang HC, Chen ST, Wang KT, Ho CL. Inhibition of Protein Kinase C by Snake Venom Toxins: Comparison of Enzyme Inhibition, Lethality and Hemolysis among Different Cardiotoxin Isoforms. Biochem. Mol. Biol. Int. 35, 1103 (1995).

1993

  1. Chen ST, Chen SY, Chen HJ, Huang HC, Wang KT. Probing the S-1$^prime$ Subsite Selectivity of an Industrial Alkaline Protease in Anhydrous t-Butanol. Bioorg. Med. Chem. Lett. 3, 727-733 (1993).
  2. Chen ST, Tu CC, Chen SY, Huang HC, Wang KT. Investigating the s-2 subsite selectivity of alkaline proteases in hydrolysis of diastereo-peptide esters and molecular-modeling interpretation. Bioorg. Med. Chem. 1, 361-367 (1993).

Books & Chapters

  1. Juan HF & Huang HC (ed.). A Practical Guide to Cancer Systems Biology. World Scientific Publishing, ISBN: 9813229144 (2018).
  2. Juan HF & Huang HC (ed.). Systems Biology: Applications in Cancer-related Research. World Scientific Publishing, ISBN: 9814324450 (2012).
  3. Baba T, Huang HC, Datsenko K, Wanner BL, Mori H. The Applications of Systematic In-Frame, Single-Gene Knockout Mutant Collection of Escherichia coli K-12 (Chapter 12). in Microbial Gene Essentiality --- Protocols and Bioinformatics, ed. Osterman, Andrei L. & Gerdes, Svetlana, Humana Press, pp.~183-194, ISBN: 978-1-58829-378-7 (2008).
  4. Juan HF & Huang HC. Bioinformatics: Microarray Data Clustering and Functional Classification (Chapter 25). in Microarrays (2nd ed.): Volume 2, Applications and Data Analysis, ed. Rampal, Jang B., Humana Press, pp.~405-416, ISBN: 978-1-58829-944-4 (2007).